Recent advancements in multimodal language models have opened new avenues for analysing scientific image data using natural language instructions. In this post, we explore the capabilities of OpenAI’s o4-mini-high model for performing cell segmentation tasks on microscopy images through prompt-based interaction. Rather than relying on traditional computer vision techniques
Identifying specific clinical findings in unstructured medical texts is a common challenge in healthcare data science. In this post, we benchmark Google’s Gemini 2.5 Flash language model on a zero-shot classification task: detecting the presence or absence of distal fibula fractures in real-world German radiology reports. Without any
We assessed the ability of Claude 4 Sonnet and GPT-4o to classify brain MRI images as healthy or tumorous for research labelling purposes, using both the chat interface (10 images) and the API (125 images). Claude 4 Sonnet achieved perfect accuracy (10/10) in chat, but its API refused to
Prompt-based methods are becoming increasingly relevant in biomedical text mining, offering flexible ways to perform tasks such as named entity recognition without explicit model training. In this case study, we assess the performance of DeepSeek-V3 on a structured disease mention extraction task using a curated subset of the NCBI Disease
Working with biomedical corpora often requires programming skills, specialised formats, and time-consuming preprocessing. But what if you could transform a complex annotated dataset—like the NCBI Disease Corpus—into a structured, analysis-ready CSV using nothing more than a single, well-designed prompt? In this post, we demonstrate how a no-code, GenAI-powered
